SubtiBank SubtiBank
ywbD [2017-8-11 16:0:3]
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ywbD [2017-8-11 16:0:3]

unknown
locus
BSU38360
pI
9.18
mw
44.28 kDa
protein length
396 aa Sequence Blast
gene length
1188 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ipa-19d
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.3|rRNA modification and maturation/ based on similarity]

    • Gene

    Coordinates
    3,935,824 → 3,937,014

    The protein

    Catalyzed reaction/ biological activity

  • S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C(5)-methylcytosine (according to Swiss-Prot)

    • Protein family

  • RlmI family (according to Swiss-Prot)

    • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|F2F0B16E5F55C8C91C20E4FFC7A63E3CD09D4EFD|ywbD]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|5A6FBAE6553343092862CB79E150F934978C32A9|SinR]: repression, [Pubmed|16430695], in [regulon|5A6FBAE6553343092862CB79E150F934978C32A9|SinR regulon]
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    Biological materials

    Mutant

  • MGNA-B222 (ywbD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1221 NBRP B. subtilis, Japan]

    • lacZ fusion

  • GP1614 ''amyE::p(ywbD-lacZ cat)'', constructed with pGP2150 based on [protein|search|pAC5], available in [SW| Jörg Stülke]'s lab

    • References

  • 16430695